RustFungiGenomicsV1, Main, Exploration, bibRecord, 000386

Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.

Identifieur interne : 000386 ( Main/Exploration ); précédent : 000385; suivant : 000387

Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.

Auteurs : F K S. Yeo [Pays-Bas, Malaisie] ; Y. Wang [République populaire de Chine] ; T. Vozabova [Pays-Bas, République tchèque] ; C. Huneau [France] ; P. Leroy [France] ; B. Chalhoub [France] ; X Q Qi [République populaire de Chine] ; R E Niks [Pays-Bas] ; T C Marcel [Pays-Bas, France]

Source :

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 1432-2242 ] ; 2016.

RBID : pubmed:26542283

Descripteurs français

English descriptors

KwdEn :
- Basidiomycota (MeSH), Chromosome Mapping (MeSH), Chromosomes, Artificial, Bacterial (MeSH), DNA, Plant (genetics), Disease Resistance (genetics), Gene Library (MeSH), Genes, Plant (MeSH), Haplotypes (MeSH), Hordeum (genetics), Hordeum (microbiology), Molecular Sequence Annotation (MeSH), Phenotype (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Quantitative Trait Loci (MeSH), Sequence Analysis, DNA (MeSH), Transcriptome (MeSH).
MESH :
- chemical , genetics : DNA, Plant.
- genetics : Disease Resistance, Hordeum, Plant Diseases.
- microbiology : Hordeum, Plant Diseases.
- Basidiomycota, Chromosome Mapping, Chromosomes, Artificial, Bacterial, Gene Library, Genes, Plant, Haplotypes, Molecular Sequence Annotation, Phenotype, Quantitative Trait Loci, Sequence Analysis, DNA, Transcriptome.

Abstract

KEY MESSAGE

Rphq2, a minor gene for partial resistance to Puccinia hordei , was physically mapped in a 188 kbp introgression with suppressed recombination between haplotypes of rphq2 and Rphq2 barley cultivars.

ABSTRACT

Partial and non-host resistances to rust fungi in barley (Hordeum vulgare) may be based on pathogen-associated molecular pattern (PAMP)-triggered immunity. Understanding partial resistance may help to understand non-host resistance, and vice versa. We constructed two non-gridded BAC libraries from cultivar Vada and line SusPtrit. Vada is immune to non-adapted Puccinia rust fungi, and partially resistant to P. hordei. SusPtrit is susceptible to several non-adapted rust fungi, and has been used for mapping QTLs for non-host and partial resistance. The BAC libraries help to identify genes determining the natural variation for partial and non-host resistances of barley to rust fungi. A major-effect QTL, Rphq2, for partial resistance to P. hordei was mapped in a complete Vada and an incomplete SusPtrit contig. The physical distance between the markers flanking Rphq2 was 195 Kbp in Vada and at least 226 Kbp in SusPtrit. This marker interval was predicted to contain 12 genes in either accession, of which only five genes were in common. The haplotypes represented by Vada and SusPtrit were found in 57 and 43%, respectively, of a 194 barley accessions panel. The lack of homology between the two haplotypes probably explains the suppression of recombination in the Rphq2 area and limit further genetic resolution in fine mapping. The possible candidate genes for Rphq2 encode peroxidases, kinases and a member of seven-in-absentia protein family. This result suggests that Rphq2 does not belong to the NB-LRR gene family and does not resemble any of the partial resistance genes cloned previously.

DOI: 10.1007/s00122-015-2627-5
PubMed: 26542283
PubMed Central: PMC4733143

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en">Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.</title>
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<country xml:lang="fr">Malaisie</country>
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<wicri:regionArea>The Institute of Botany of the Academy of Science of the Czech Republic, Zámek 1, 252 43, Průhonice</wicri:regionArea>
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<country xml:lang="fr">Pays-Bas</country>
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<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708PB, 6700 AJ, Wageningen</wicri:regionArea>
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<placeName><settlement type="city">Wageningue</settlement>
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</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:affiliation>INRA, UMR1290, BIOGER, 78850, Thiverval-Grignon, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, UMR1290, BIOGER, 78850, Thiverval-Grignon</wicri:regionArea>
<placeName><region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Thiverval-Grignon</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:affiliation>AgroParisTech, UMR1290, BIOGER, 78850, Thiverval-Grignon, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>AgroParisTech, UMR1290, BIOGER, 78850, Thiverval-Grignon</wicri:regionArea>
<placeName><region type="region" nuts="2">Île-de-France</region>
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</author>
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<series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title>
<idno type="eISSN">1432-2242</idno>
<imprint><date when="2016" type="published">2016</date>
</imprint>
</series>
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</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (MeSH)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Artificial, Bacterial (MeSH)</term>
<term>DNA, Plant (genetics)</term>
<term>Disease Resistance (genetics)</term>
<term>Gene Library (MeSH)</term>
<term>Genes, Plant (MeSH)</term>
<term>Haplotypes (MeSH)</term>
<term>Hordeum (genetics)</term>
<term>Hordeum (microbiology)</term>
<term>Molecular Sequence Annotation (MeSH)</term>
<term>Phenotype (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>Quantitative Trait Loci (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Transcriptome (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Annotation de séquence moléculaire (MeSH)</term>
<term>Banque de gènes (MeSH)</term>
<term>Basidiomycota (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Chromosomes artificiels de bactérie (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Haplotypes (MeSH)</term>
<term>Hordeum (génétique)</term>
<term>Hordeum (microbiologie)</term>
<term>Locus de caractère quantitatif (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Phénotype (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Transcriptome (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term>
<term>Hordeum</term>
<term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term>
<term>Hordeum</term>
<term>Maladies des plantes</term>
<term>Résistance à la maladie</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Hordeum</term>
<term>Maladies des plantes</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Hordeum</term>
<term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Basidiomycota</term>
<term>Chromosome Mapping</term>
<term>Chromosomes, Artificial, Bacterial</term>
<term>Gene Library</term>
<term>Genes, Plant</term>
<term>Haplotypes</term>
<term>Molecular Sequence Annotation</term>
<term>Phenotype</term>
<term>Quantitative Trait Loci</term>
<term>Sequence Analysis, DNA</term>
<term>Transcriptome</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Annotation de séquence moléculaire</term>
<term>Banque de gènes</term>
<term>Basidiomycota</term>
<term>Cartographie chromosomique</term>
<term>Chromosomes artificiels de bactérie</term>
<term>Gènes de plante</term>
<term>Haplotypes</term>
<term>Locus de caractère quantitatif</term>
<term>Phénotype</term>
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<front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b>
</p>
<p>Rphq2, a minor gene for partial resistance to Puccinia hordei , was physically mapped in a 188 kbp introgression with suppressed recombination between haplotypes of rphq2 and Rphq2 barley cultivars.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>ABSTRACT</b>
</p>
<p>Partial and non-host resistances to rust fungi in barley (Hordeum vulgare) may be based on pathogen-associated molecular pattern (PAMP)-triggered immunity. Understanding partial resistance may help to understand non-host resistance, and vice versa. We constructed two non-gridded BAC libraries from cultivar Vada and line SusPtrit. Vada is immune to non-adapted Puccinia rust fungi, and partially resistant to P. hordei. SusPtrit is susceptible to several non-adapted rust fungi, and has been used for mapping QTLs for non-host and partial resistance. The BAC libraries help to identify genes determining the natural variation for partial and non-host resistances of barley to rust fungi. A major-effect QTL, Rphq2, for partial resistance to P. hordei was mapped in a complete Vada and an incomplete SusPtrit contig. The physical distance between the markers flanking Rphq2 was 195 Kbp in Vada and at least 226 Kbp in SusPtrit. This marker interval was predicted to contain 12 genes in either accession, of which only five genes were in common. The haplotypes represented by Vada and SusPtrit were found in 57 and 43%, respectively, of a 194 barley accessions panel. The lack of homology between the two haplotypes probably explains the suppression of recombination in the Rphq2 area and limit further genetic resolution in fine mapping. The possible candidate genes for Rphq2 encode peroxidases, kinases and a member of seven-in-absentia protein family. This result suggests that Rphq2 does not belong to the NB-LRR gene family and does not resemble any of the partial resistance genes cloned previously.</p>
</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26542283</PMID>
<DateCompleted><Year>2016</Year>
<Month>06</Month>
<Day>06</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-2242</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>129</Volume>
<Issue>2</Issue>
<PubDate><Year>2016</Year>
<Month>Feb</Month>
</PubDate>
</JournalIssue>
<Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title>
<ISOAbbreviation>Theor Appl Genet</ISOAbbreviation>
</Journal>
<ArticleTitle>Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.</ArticleTitle>
<Pagination><MedlinePgn>289-304</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00122-015-2627-5</ELocationID>
<Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="CONCLUSIONS">Rphq2, a minor gene for partial resistance to Puccinia hordei , was physically mapped in a 188 kbp introgression with suppressed recombination between haplotypes of rphq2 and Rphq2 barley cultivars.</AbstractText>
<AbstractText Label="ABSTRACT" NlmCategory="UNASSIGNED">Partial and non-host resistances to rust fungi in barley (Hordeum vulgare) may be based on pathogen-associated molecular pattern (PAMP)-triggered immunity. Understanding partial resistance may help to understand non-host resistance, and vice versa. We constructed two non-gridded BAC libraries from cultivar Vada and line SusPtrit. Vada is immune to non-adapted Puccinia rust fungi, and partially resistant to P. hordei. SusPtrit is susceptible to several non-adapted rust fungi, and has been used for mapping QTLs for non-host and partial resistance. The BAC libraries help to identify genes determining the natural variation for partial and non-host resistances of barley to rust fungi. A major-effect QTL, Rphq2, for partial resistance to P. hordei was mapped in a complete Vada and an incomplete SusPtrit contig. The physical distance between the markers flanking Rphq2 was 195 Kbp in Vada and at least 226 Kbp in SusPtrit. This marker interval was predicted to contain 12 genes in either accession, of which only five genes were in common. The haplotypes represented by Vada and SusPtrit were found in 57 and 43%, respectively, of a 194 barley accessions panel. The lack of homology between the two haplotypes probably explains the suppression of recombination in the Rphq2 area and limit further genetic resolution in fine mapping. The possible candidate genes for Rphq2 encode peroxidases, kinases and a member of seven-in-absentia protein family. This result suggests that Rphq2 does not belong to the NB-LRR gene family and does not resemble any of the partial resistance genes cloned previously.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yeo</LastName>
<ForeName>F K S</ForeName>
<Initials>FK</Initials>
<AffiliationInfo><Affiliation>Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708PB, 6700 AJ, Wageningen, The Netherlands.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Plant Science and Environmental Ecology, Faculty of Resource Science and Technology, University Malaysia Sarawak, 94300, Kota Samarahan, Sarawak, Malaysia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Y</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Fragrant Hill, Beijing, 100093, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vozabova</LastName>
<ForeName>T</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708PB, 6700 AJ, Wageningen, The Netherlands.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>The Institute of Botany of the Academy of Science of the Czech Republic, Zámek 1, 252 43, Průhonice, Czech Republic.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Huneau</LastName>
<ForeName>C</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>INRA, UMR1165, Unité de Recherche en Génomique Végétale, 91057, Evry, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Université d'Evry Val d'Essonne, UMR1165, Unité de Recherche en Génomique Végétale, 91057, Evry, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Leroy</LastName>
<ForeName>P</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>INRA, UMR1095, Genetics Diversity and Ecophysiology of Cereals, 63039, Clermont-Ferrand, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Université Blaise Pascal, UMR1095, Genetics Diversity and Ecophysiology of Cereals, 63039, Clermont-Ferrand, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chalhoub</LastName>
<ForeName>B</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>INRA, UMR1165, Unité de Recherche en Génomique Végétale, 91057, Evry, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Université d'Evry Val d'Essonne, UMR1165, Unité de Recherche en Génomique Végétale, 91057, Evry, France.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Qi</LastName>
<ForeName>X Q</ForeName>
<Initials>XQ</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Fragrant Hill, Beijing, 100093, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Niks</LastName>
<ForeName>R E</ForeName>
<Initials>RE</Initials>
<AffiliationInfo><Affiliation>Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708PB, 6700 AJ, Wageningen, The Netherlands. rients.niks@wur.nl.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Marcel</LastName>
<ForeName>T C</ForeName>
<Initials>TC</Initials>
<AffiliationInfo><Affiliation>Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708PB, 6700 AJ, Wageningen, The Netherlands.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>INRA, UMR1290, BIOGER, 78850, Thiverval-Grignon, France.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>AgroParisTech, UMR1290, BIOGER, 78850, Thiverval-Grignon, France.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>11</Month>
<Day>05</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>Theor Appl Genet</MedlineTA>
<NlmUniqueID>0145600</NlmUniqueID>
<ISSNLinking>0040-5752</ISSNLinking>
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</MeshHeading>
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</MeshHeading>
<MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015723" MajorTopicYN="N">Gene Library</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006239" MajorTopicYN="N">Haplotypes</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001467" MajorTopicYN="N">Hordeum</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName>
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<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D040641" MajorTopicYN="Y">Quantitative Trait Loci</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName>
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<Day>19</Day>
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<Month>10</Month>
<Day>17</Day>
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Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.

Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.

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